Links for servers and software for Bioinformatics courses for students at University of Bern



UCSC Genome Browser          NCBI Map Viewer   


Yeast Genome    Microbial Genomes  




 Literature  PUBMED    Science Citation Index




 BLAST servers  NCBI              



 BLAT Search for Genomes BLAT

 Seq alignment  Blast2Seq    Lalign   TCoffee         ClustalW           

 Sequence conversion: ReadSeq

 Alignment Editors  GeneDoc  CINEMA  BOXSHADE  JALVIEW  CLC Sequence Viewer (Very good tool for local install)
 DNA Seq Analysis  BioTools  NEBcutter   Sequence Editor   Nucleic Acid Sequence Massager 

 Feature Extractor     ORF Finder   VectorScreen

 Prot Seq Analysis  ProtParam tool (Physical and Chemical Properties of a given Protein Sequence)

 Peptide Cutter (Digestion of Proteins)

 PIR           MIPS             


 Protein family  PROSITE               




 Protein structure  PDB 




 3D Str Prediction  Swiss Model   HHPRED
 Metabolic/pathway  KEGG          



PD Dr. Amit V Pandey
Pediatric Endocrinology, Diabetology and Metabolism,

KIKL C837, Inselspital

University Children's Hospital Bern,

Freiburgstrasse 15, 3010 Bern


Tel: +41 31 632 9637 (Office)

        +41 31 632 9527 (Lab)



Tweets from PANDEY LAB @Pandeylab


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© Amit Pandey